Software

Repositories

• GitHub  
• BitBucket  

Secuer: ultrafast, scalable and accurate clustering of single-cell RNA-seq data

• Secuer

ASK: Seek circular amplicons from high throughput sequencing data.

• ASK

HiCapp: Generalized Hi-C pipeline designed for analyzing both tumor and normal samples.

• HiCapp

scCGI-seq: Application of EM algorithm for analyzing single cell DNA methylome

• scCGI-seq  

psRobot: Plant Small RNA Analysis Toolbox

• psRobot  

psMimic: Plant miRNA endogenous target mimics predictor

• psMimic